One-to-n alignments
Command: compare-matrices -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/04/compare-matrices_2019-07-04.134553_6Qko3H/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/04/compare-matrices_2019-07-04.134553_6Qko3H/compare-matrices.tab
One-to-n matrix alignment; reference matrix: oligos_5-8nt_m3_shift5 ; 15 matrices ; sort_field=rank_mean
| Matrix name | Aligned logos | cor |
Ncor |
logoDP |
NsEucl |
NSW |
rcor |
rNcor |
rlogoDP |
rNsEucl |
rNSW |
rank_mean |
match_rank |
Aligned matrices |
|---|
| oligos_5-8nt_m3_shift5 (oligos_5-8nt_m3) |
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; oligos_5-8nt_m3; m=0 (reference); ncol1=22; shift=5; ncol=30; -----hmccyAAAACCCTAAAmCCyhm---
; Alignment reference
a 0 0 0 0 0 33 24 18 11 15 67 93 91 82 2 1 0 8 81 83 69 51 15 8 19 25 32 0 0 0
c 0 0 0 0 0 27 38 39 57 36 4 1 2 9 90 91 89 10 4 1 15 27 68 69 36 28 27 0 0 0
g 0 0 0 0 0 7 12 16 13 10 3 1 1 1 1 1 2 1 7 9 3 2 3 3 12 8 13 0 0 0
t 0 0 0 0 0 28 21 22 14 34 21 0 1 3 2 2 4 76 3 2 8 15 9 15 28 34 23 0 0 0
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| TRP2.ampDAP_M0612_AthalianaCistrome_shift4 (TRP2.ampDAP:M0612:AthalianaCistrome) |
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0.854 |
0.742 |
11.768 |
0.939 |
0.925 |
3 |
1 |
1 |
4 |
4 |
2.600 |
1 |
; oligos_5-8nt_m3 versus TRP2.ampDAP_M0612_AthalianaCistrome (TRP2.ampDAP:M0612:AthalianaCistrome); m=1/14; ncol2=21; w=20; offset=-1; strand=D; shift=4; score= 2.6; ----AAACCCTAAACCCTAAACCCT-----
; cor=0.854; Ncor=0.742; logoDP=11.768; NsEucl=0.939; NSW=0.925; rcor=3; rNcor=1; rlogoDP=1; rNsEucl=4; rNSW=4; rank_mean=2.600; match_rank=1
a 0 0 0 0 90 85 87 0 9 7 12 103 104 101 2 1 0 5 99 99 97 7 14 4 11 0 0 0 0 0
c 0 0 0 0 3 2 1 85 88 75 2 0 0 3 102 103 102 0 0 0 0 80 75 76 10 0 0 0 0 0
g 0 0 0 0 2 4 1 5 5 5 1 1 0 0 0 0 0 0 4 3 2 1 1 1 5 0 0 0 0 0
t 0 0 0 0 9 13 15 14 2 17 89 0 0 0 0 0 2 99 1 2 5 16 14 23 78 0 0 0 0 0
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| TRP1_MA1352.1_JASPAR_shift4 (TRP1:MA1352.1:JASPAR) |
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0.766 |
0.732 |
11.359 |
0.923 |
0.871 |
6 |
2 |
2 |
9 |
11 |
6.000 |
6 |
; oligos_5-8nt_m3 versus TRP1_MA1352.1_JASPAR (TRP1:MA1352.1:JASPAR); m=6/14; ncol2=23; w=22; offset=-1; strand=D; shift=4; score= 6; ----AAACCCTAAACCCTAAACCCTAA---
; cor=0.766; Ncor=0.732; logoDP=11.359; NsEucl=0.923; NSW=0.871; rcor=6; rNcor=2; rlogoDP=2; rNsEucl=9; rNSW=11; rank_mean=6.000; match_rank=6
a 0 0 0 0 45 44 47 0 5 2 0 47 47 48 0 4 0 1 47 43 46 0 8 3 2 47 44 0 0 0
c 0 0 0 0 0 0 0 44 39 36 0 0 0 0 43 43 47 0 0 2 0 43 39 45 1 0 0 0 0 0
g 0 0 0 0 0 0 0 1 2 5 0 0 1 0 0 0 1 0 0 0 2 1 0 0 0 0 0 0 0 0
t 0 0 0 0 3 4 1 3 2 5 48 1 0 0 5 1 0 47 1 3 0 4 1 0 45 1 4 0 0 0
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| SRS7.DAP_M0745_AthalianaCistrome_shift4 (SRS7.DAP:M0745:AthalianaCistrome) |
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0.733 |
0.701 |
8.788 |
0.922 |
0.866 |
10 |
3 |
6 |
10 |
12 |
8.200 |
8 |
; oligos_5-8nt_m3 versus SRS7.DAP_M0745_AthalianaCistrome (SRS7.DAP:M0745:AthalianaCistrome); m=8/14; ncol2=23; w=22; offset=-1; strand=D; shift=4; score= 8.2; ----AAACCCTAAACCCTAAACCCTAA---
; cor=0.733; Ncor=0.701; logoDP=8.788; NsEucl=0.922; NSW=0.866; rcor=10; rNcor=3; rlogoDP=6; rNsEucl=10; rNSW=12; rank_mean=8.200; match_rank=8
a 0 0 0 0 24 22 25 0 0 2 0 23 21 22 1 2 0 0 24 17 23 2 0 0 2 25 22 0 0 0
c 0 0 0 0 0 0 0 22 24 23 0 0 0 0 22 21 21 0 0 0 1 21 22 23 0 0 0 0 0 0
g 0 0 0 0 0 1 0 1 1 0 0 0 1 1 1 0 1 0 0 4 0 0 0 0 0 0 2 0 0 0
t 0 0 0 0 1 2 0 2 0 0 25 2 3 2 1 2 3 25 1 4 1 2 3 2 23 0 1 0 0 0
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